Publications
Building integrative functional maps of gene regulation
Xu, J., Pratt, H. E., Moore, J. E., Gerstein, M. B. & Weng, Z. Hum Mol Genet (2022).
Zhou, H., Arapoglou, T., Li, X., Li, Z., Zheng, X., Moore, J., Asok, A., Kumar, S., Blue, E. E., Buyske, S., Cox, N., Felsenfeld, A., Gerstein, M., Kenny, E., Li, B., Matise, T., Philippakis, A., Rehm, H., Sofia, H. J., Snyder, G., NHGRI Genome Sequencing Program Variant Functional Annotation Working Group, Weng, Z., Neale, B., Sunyaev, S. R. & Lin, X. Nucleic Acids Res (2022)
Preprints
Multi-center integrated analysis of non-coding CRISPR screens
Yao, D., Tycko, J., Oh, J. W., Bounds, L. R., Gosai, S. J., Lataniotis, L., Mackay-Smith, A., Doughty, B. R., Gabdank, I., Schmidt, H., Youngworth, I., Andreeva, K., Ren, X., Barrera, A., Luo, Y., Siklenka, K., Yardımcı, G. G., The ENCODE4 Consortium, Tewhey, R., Kundaje, A., Greenleaf, W. J., Sabeti, P. C., Leslie, C., Pritykin, Y., Moore, J. E., Beer, M. A., Gersbach, C. A., Reddy, T. E., Shen, Y., Engreitz, J. M., Bassik, M. C. & Reilly, S. K.. bioRxiv (2022)
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
Rozowsky, J., Drenkow, J., Yang, Y. T., Gursoy, G., Galeev, T., Borsari, B., Epstein, C. B., Xiong, K., Xu, J., Gao, J., Yu, K., Berthel, A., Chen, Z., Navarro, F., Liu, J., Sun, M. S., Wright, J., Chang, J., Cameron, C. J. F., Shoresh, N., Gaskell, E., Adrian, J., Aganezov, S., Aguet, F., Balderrama-Gutierrez, G., Banskota, S., Corona, G. B., Chee, S., Chhetri, S. B., Martins, G. C. C., Danyko, C., Davis, C. A., Farid, D., Farrell, N. P., Gabdank, I., Gofin, Y., Gorkin, D. U., Gu, M., Hecht, V., Hitz, B. C., Issner, R., Kirsche, M., Kong, X., Lam, B. R., Li, S., Li, B., Li, T., Li, X., Lin, K. Z., Luo, R., Mackiewicz, M., Moore, J. E., Mudge, J., Nelson, N., Nusbaum, C., Popov, I., Pratt, H. E., Qiu, Y., Ramakrishnan, S., Raymond, J., Salichos, L., Scavelli, A., Schreiber, J. M., Sedlazeck, F. J., See, L. H., Sherman, R. M., Shi, X., Shi, M., Sloan, C. A., Seth Strattan, J., Tan, Z., Tanaka, F. Y., Vlasova, A., Wang, J., Werner, J., Williams, B., Xu, M., Yan, C., Yu, L., Zaleski, C., Zhang, J., Ardlie, K., Michael Cherry, J., Mendenhall, E. M., Noble, W. S., Weng, Z., Levine, M. E., Dobin, A., Wold, B., Mortazavi, A., Ren, B., Gillis, J., Myers, R. M., Snyder, M. P., Choudhary, J., Milosavljevic, A., Schatz, M. C., Guigó, R., Bernstein, B. E., Gingeras, T. R. & Gerstein, M. bioRxiv (2022)
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